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X-ray Tomography at Synchrotron Facilities

Feb 22 – 26, 2021
Virtual
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Contribution List

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  1. 1. Welcome address
    Francesco De Carlo (APS), Lucia Mancini (Elettra - SIncrotrone Trieste S.C.p.A., LINXS)
    2/22/21, 3:00 PM
  2. 2. Tomography at the Advanced Photon Source
    Mark Rivers, Viktor Nikitin and Francesco De Carlo (Advanced Photon Source)
    2/22/21, 3:20 PM
    Oral presentation + Demo
  3. 3. Interactive Q&A (moderator: L. Mancini)
    2/22/21, 4:30 PM
  4. 4. Workflows at Diamond's tomography beamlines
    Andrew Bodey, Robert Atwood and Sharif Ahmed (Diamond Light Source)
    2/22/21, 5:10 PM
    Oral presentation + Demo

    Typical workflows for microtomography experiments at I12, I13-2 and DIAD will be presented. I12 (53-150keV) and I13-2 (8-30keV) are suited to large and small samples respectively, and the new beamline DIAD (7-38keV) will allow simultaneous imaging and diffraction for small samples. Methods for accurate beamline alignment and stable sample mounting will be discussed, together with the...

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  5. 5. Interactive Q&A (moderator: D.Y. Parkinson)
    2/22/21, 6:20 PM
  6. 7. Short introduction to Day 2
    2/23/21, 3:00 PM
  7. 8. Tomodata - a Python interface for PyHST2 at SOLEIL
    Andrew King (SOLEIL Synchrotron)
    2/23/21, 3:05 PM
    Oral presentation + Demo

    At SOLEIL's tomography beamlines, tomography acquisitions are performed using the SOLEIL FlyScan continuous scanning architecture. The resulting data are reconstructed using PyHST2. In both cases, a layer of Python code has been developed to guide the user through the process, aligning samples, setting parameters, correcting artefacts, and launching reconstructions. Batch or pipeline...

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  8. 9. Interactive Q&A (moderator: C. Rau)
    2/23/21, 3:50 PM
  9. 10. System control and data reduction for nano-resolution spectro-tomography at SSRL
    Yijin Liu (Stanford Synchrotron Radiation Lightsource)
    2/23/21, 4:30 PM
    Oral presentation
  10. 11. Interactive Q&A (moderator: F. De Carlo)
    2/23/21, 5:00 PM
  11. 35. Multiscale monochromatic and pink-beam microCT imaging at the ESRF-ID17 biomedical beamline
    Alberto Bravin (European Synchrotron Radiation Facility)
    2/23/21, 5:25 PM
    Oral presentation + Demo

    Recent trends in hard X-ray biomedical microCT aim at pushing the limits in both spatial and temporal resolutions. Additionally, when functional parameters in small animal organs need to be accessed, microCT has to be performed in vivo. All these challenges necessitate intense and coherent photon beams. To address these requests, the ESRF-ID17 biomedical beamline is equipped with different...

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  12. 12. Unification of the ESRF tomographic processing software
    Nicola Vigano' (European Synchrotron Radiation Facility)
    2/23/21, 5:55 PM
    Oral presentation + Demo

    The ESRF tomography acquisition and processing software has traditionally suffered from fragmentation across the different beamlines, resulting in many different solutions for similar problems.
    The associated maintenance and development costs have severely hindered its progress.
    We are currently re-thinking our acquisition and processing workflows from scratch, with a unified underlying...

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  13. 13. Interactive Q&A (moderator: F. De Carlo)
    2/23/21, 6:25 PM
  14. 14. Short introduction to Day 3
    2/24/21, 3:00 PM
  15. 15. Work- and Dataflow for CT at BAMline
    Henning Markötter and Michael Sintschuk (Helmholtz-Zentrum Berlin (BESSY II))
    2/24/21, 3:05 PM
    Oral presentation + Demo

    After a general presentation of the beamline, specifically the workflow for ex-situ CT at BAMline is presented. Although being used in a broad variety of research fields the usual workflow for CT experiments is in most cases similar in terms of sample mounting, tomographic scan and reconstruction. Specific scanning schemes allow for a preview reconstruction carried out during the scan. A...

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  16. 16. Interactive Q&A (moderator: L. Mancini)
    2/24/21, 3:50 PM
  17. 17. User interface at the P05 Nanotomography
    Silja Flenner (Helmholtz-Zentrum Geesthacht (DESY))
    2/24/21, 4:30 PM
    Oral presentation + Demo

    Most users at the Nanotomography endstation at P05 are not very experienced in synchrotron tomography measurements, as they are coming from very different fields, e.g. Biologist, Geologist or Medics. The setup of a transmission x-ray microscope (TXM) however is often more complex with respect to sample alignment, different detector choices and varying scan parameters. An in-house developed...

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  18. 18. Interactive Q&A (moderator: A. Rack)
    2/24/21, 5:10 PM
  19. 19. High-throughput 3D Imaging at KARA
    Tomas Farago (ANKA – KIT)
    2/24/21, 5:35 PM
    Oral presentation + Demo
  20. 20. Interactive Q&A (moderator: A. Rack)
    2/24/21, 6:05 PM
  21. 21. Short introduction to Day 4
    2/25/21, 3:00 PM
  22. 22. MicroCT pipeline at the SYRMEP beamline of Elettra
    Amal Abouelhassan, Adriano Contillo, Francesco Brun and Lucia Mancini (Elettra Sincrotrone Trieste)
    2/25/21, 3:05 PM
    Oral presentation + Demo
  23. 23. Interactive Q&A (moderator: C. Rau)
    2/25/21, 4:10 PM
  24. 24. Collecting and analyzing data at Beamline 8.3.2 (microCT) at the Advanced Light Source
    Dilworth Y. Parkinson (Advanced Light Source)
    2/25/21, 4:50 PM
    Oral presentation + Demo

    I will demonstrate the process of setting up scans, collecting data, and doing image processing at Beamline 8.3.2 (microCT) at the Advanced Light Source (ALS) at Lawrence Berkeley National Laboratory. Like many of the beamlines at the Advanced Light Source (ALS), Beamline 8.3.2 uses Labview for beamline and enstation control, which provides convenient graphical interfaces for doing many tasks,...

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  25. 25. Interactive Q&A (moderator: V. Nikitin)
    2/25/21, 5:30 PM
  26. 26. Environment for full-field tomographic reconstructions at MAX IV beamlines
    Zdenek Matej (MAX IV)
    2/25/21, 5:55 PM
    Oral presentation
  27. 28. Interactive Q&A (moderator: V. Nikitin)
    2/25/21, 6:25 PM
  28. 29. Short introduction to Day 5
    2/26/21, 3:00 PM
  29. 30. Operation at the TOMCAT beamline: latest developments from acquisition to data visualisation
    Federica Marone and Christian Schlepuetz (Swiss Light Source)
    2/26/21, 3:05 PM
    Oral presentation + Demo

    In this workshop, we will first give a short presentation (~20 min) on how full field tomography is performed in a standard way at TOMCAT. The latest developments achieved to ease the operation will be presented: hdf5 data handling, reconstruction pipeline optimisation, offline HPC cluster and data management.
    In a second part, a live interactive demo and discussion round (~40 min) will be...

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  30. 31. Interactive Q&A (moderator: L. Mancini)
    2/26/21, 4:05 PM
  31. 32. Plenary discussion (moderator: F. De Carlo)
    2/26/21, 4:45 PM
  32. 33. Wrap up, summary & farewell
    2/26/21, 5:45 PM